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The nf-core framework tools, to create, check and develop best-practice guidelines for Nextflow. More information:

  • List existing pipelines on nf-core:

nf-core list

  • Create a new pipeline skeleton:

nf-core create

  • Lint the pipeline code:

nf-core lint {{path/to/directory}}

  • Bump software versions in pipeline recipe:

nf-core bump-version {{path/to/directory}} {{new_version}}

  • Launch an nf-core pipeline:

nf-core launch {{pipeline_name}}

  • Download an nf-core pipeline for offline use:

nf-core download {{pipeline_name}}